Products
Software tools for binding site prediction, weight matrix search, regulatory sequences analysis, microarray analysis, footprint. Most of tools are freeware or have a free trial and avaliable for download. Most of tools are written for windows platform.
Applications
With this windows application you can easily extract promoter sequences for given list of genes. Gene indificators from Affimetrix, EMBL, HUGO, SWISSPROT, RefSeq, GO and other biological databases can be used.
Output file is in the EMBL format.
The Promextra program is designed using the freeware EnsEmbl genomic databases.
This program allows to analyse results of microarray experiments to identify transcription factors involved into regulation in the experiment.
C++ application for regulatory sequences analysis. Allows to scan regulatory sequences for binding sites. With this tool you can dynamicaly vary sites cutoff and selected matrices.
Search for Nuclear Receptor Binding Sites is also applicable. Uses double-site models for binding sites search.
Software for wavelet transformation of DNA sequences.
Freeware tool for extracting promoters from files with affymetrix identifiers. This software is for windows platform.
Matrix Editor allows tocreate and edit nucleotide weight matrices, and appropriate matrix sets profiles.
Web resources
A web tool for philogenetic footprinting and realignment. Input: ClustalX alignment, Output: binding sites prediction using input alignment.
This resource provides search for TF binding sites on SNP, entered by user.
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