BioRainbow
 

Site Viewer

Site Viewer initially called "Regulatory Sequence Analysis Tool" is a C++ graphical application for regulatory sequences analysis. Allows to scan regulatory sequences for binding sites. Includes search with TRANSFAC(r) weight matrices and specific search method for nuclear receptors. With this tool you can dynamicaly vary sites cutoff and selected matrices. Free trial version is avaliable.

Trial Version:
Download (coming soon)
  • Available for 30 days trial usage
  • No functional restrictions
  • Able to use any version of TRANSFAC matrices library you have
  • Search some Tyroid-specific nuclear receptors (using double-core matrices method)
  • Includes double-core matrices for: HNF4, LXR, PPAR, PR, PXR, RAR, SF1, CONGR, T3R, VDR
    		•  Complete Version:
    Purchase (coming soon)
  • No functional restrictions
  • Able to use any version of TRANSFAC matrices library you have
  • Search Steroid-specific and Tyroid-specific nuclear receptors (using double-core matrices method)
  • Includes double-core matrices for: AR, COUP, ER, FRX, GR, GST, GTH1, GTH2, GTH3, HNF4, LXR, PPAR, PR, PXR, RAR, SF1, CONGR, T3R, VDR, TTDR0 (Tyroid-Tyroid direct repeat with space 0), TTDR1, TTDR3, TTDR4, TTDR5, TTEV1, TTEV3, TTINV1
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